Galaxy installation
by Gerard Schaafsma
Hi,
I am a Bioinformatics student (MSc) at VU university Amsterdam, and
currently working as a trainee at Leiden University Medical Center. I had a
lot of trouble installing galaxy, but finally found out that I had an 'old'
version of pysqlite: /usr/lib/python2.4/site-packages/pysqlite-
1.0.1.egg-info
I downloaded a newer version somewhere:
pysqlite-2.3.4.egg-info
and installed it in the same directory, but that still didn't do the trick
Then I removed the old 1.0.1 package (actually I renamed it), and then all
things worked, but I don't think this is the proper way to do it. Does
anyone have suggestions how to do this the right way?
I installed this on a PC which runs under Linux/Ubuntu 7.10 operating system
Regards,
Gerard Schaafsma
Amsterdam, The Netherlands
13 years, 4 months
cluster operation is still in test?
by xu_jianzhen
Hi,galaxy users,
hi,everyone. I am a member of GIBH,Chinese Academy of Science.
I found the Operate on Genomic Intervals :cluster operation is in test version but not in main version. So how well does it if i use it now?
Regards,
Xu Jianzhen
GIBH,CAS
13 years, 5 months
How does Galaxy Obtain Transcription Regulation Region?
by Edward WIJAYA
Dear all,
In Galaxy website http://main.g2.bx.psu.edu/,
especially under:
Get Encode Data -> Transcription Regulation
I would like to know the procedure of Galaxy of obtaining
the region of all the transcription regulation. For example
the entry:
AFFX_Brg1_HL60_seqsp (20060206)
We are aware that it comes from ENCODE, but not sure
the exact procedure of obtaining it. Is it from Chip-CHIP?
Or something else?
There seem to be no documentation on this.
--
Edward
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13 years, 5 months
