When running a grouping on a data set via the Join, Subtract, Grouping
menu, I receive this error.
An error occurred running this job: *Traceback (most recent call last):
File "/opt/Bio/galaxy_dist/tools/stats/grouping.py", line 7, in ?
from rpy import *
ImportError: No module named rpy
*I'm having the hardest time figuring out which R version with what version
of Rpy to use. So far I've tried rpy-1.0.3, rpy2-2.0.6, with Rpackages
2.7.2 and 2.9.1. I've gotten both rpackages to compiled with the
--enable-R-shlib option and I have put it in my $PATH. However, when trying
to install either of they rpy packages, they complain about missing header
file RGraphics.h, Rdevices.h, and more. Does anyone have a known good
configuration to get this module working with galaxy? Which R package with
which rpy version should I be using?