Hi,
I have been taking a look at Galaxy and playing with it a bit. I have also watched several of the great tutorials. One that was particularly relevant to what I want to do was the one on SNPs. But, in addition to finding out what type of genomic region a SNP lies in e.g. intron or exon, I also want to determine, for SNPs that are in coding regions, whether they are snynonymous or non-synonymous. Is there a way of doing this in Galaxy?
I have had a really good hunt in the Tools menus but I can't find anything.
Any help much appreciated.
Tim.
Hello Tim,
I have opened the following ticket in bitbucket for this question. You can "follow" the ticket in bitbucket if you want.
Greg Von Kuster Galaxy Development Team
Timothy Hughes wrote:
Hi,
I have been taking a look at Galaxy and playing with it a bit. I have also watched several of the great tutorials. One that was particularly relevant to what I want to do was the one on SNPs. But, in addition to finding out what type of genomic region a SNP lies in e.g. intron or exon, I also want to determine, for SNPs that are in coding regions, whether they are snynonymous or non-synonymous. Is there a way of doing this in Galaxy?
I have had a really good hunt in the Tools menus but I can't find anything.
Any help much appreciated.
Tim.
-- Tim Hughes PhD (http://digitised.info) Medical Genetics Department Oslo University Hospital UllevÂl Kirkeveien 166 0407 Oslo Norway
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