Thanks everybody's help. It is not a problem anymore if I "empty cache" first then reload the page. But I got a more big problem here. Actually I am struggling with this problem for a long time.

I am trying to deploy the galaxy production server. Originally I set up the galaxy using root user and under the document root folder. Everything works fine with local sqlite. After reading the wiki, I created a new user "galaxy", and set up the galaxy server using this new "galaxy" user. I put everything in the folder: /home/galaxy/galaxy-dist/. To make things more complicated, we have a website already, for example, http://xx.xx.xx.xxx. Now I want this galaxy server using address: http://xx.xx.xx.xxx/galaxy. In my httpd.conf file, in order to access this /home/galaxy/galaxy-dist folder, I used an Alias. Then if I point these ReadwriteRules to my document root galaxy-dist folder(under user root), the galaxy server will work. But if I point to /home/galaxy/galaxy-dist folder, the galaxy server will not work at all.

Here is my httpd.conf file. Please help!

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DocumentRoot "/var/www/html" Alias /galaxy "/home/galaxy/galaxy-dist"

# # Each directory to which Apache has access can be configured with respect # to which services and features are allowed and/or disabled in that # directory (and its subdirectories). # # First, we configure the "default" to be a very restrictive set of # features. # <Directory /> Options FollowSymLinks AllowOverride None Order deny,allow Deny from all </Directory>

<Directory "/var/www/html"> …

</Directory>

<Directory "/home/galaxy/galaxy-dist"> …

RewriteEngine on

RewriteRule ^/galaxy$ /galaxy/ [R] RewriteRule ^/galaxy/static/style/(.*) /home/galaxy/galaxy-dist/static/june_2007_style/blue/$1 [L] RewriteRule ^/galaxy/static/scripts/(.*) /home/galaxy/galaxy-dist/static/scripts/packed/$1 [L] RewriteRule ^/galaxy/static/(.*) /home/galaxy/galaxy-dist/static/$1 [L] RewriteRule ^/galaxy/favicon.ico /home/galaxy/galaxy-dist/static/favicon.ico [L] RewriteRule ^/galaxy/robots.txt /home/galaxy/galaxy-dist/static/robots.txt [L] RewriteRule ^/galaxy(.*) http://localhost:8080$1 [P]

</Directory>

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On 12 Mar, 2012, at 6:47 PM, Ross wrote:

If you right click (no idea what you do on a mac) inside the galaxy center panel and choose "reload frame", that might do the trick.

On Mon, Mar 12, 2012 at 9:17 PM, Greg Edwards gedwards2@gmail.com wrote:

...

Hi, I've found that I need to be really aggressive with forcing a purge & refresh of the browser when changing things like static/welcome.html and static/images/whatever.png. It might be a function of the nginx light-weight HTML renderer within Galaxy caching things on top of the normal caching. You need to purge all the cache in your browswer totally, eg. in Chrome it's "Preferences / Delete All Browser Data" (or something like that, I'm away from my normal computer). Just forcing a refresah with the usual refresh/reload icon isn't enough. Greg E

On Wed, Mar 7, 2012 at 6:52 PM, huayan gao huayangao@gmail.com wrote:

...

Hi Nate,

I got a silly question for you. My galaxy is running now but I'd like to customize it. I've changed the welcome.html page but the galaxy mirror site is showing the old one. Do I need to change some other files or other configurations? Also, I add <lable> in tool_conf.xml file but it does not show up either. Is there another file I need to change too?

Best, Huayan ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:

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-- Greg Edwards, Port Jackson Bioinformatics gedwards2@gmail.com

---

The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list:

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-- Ross Lazarus MBBS MPH; Associate Professor, Harvard Medical School; Head, Medical Bioinformatics, BakerIDI; Tel: +61 385321444;