Hi Peter,

For now we are going to recommended just using the Fastq Groomer first, then the Clipper, to keep the tools set simple.

Apologies for the late reply, we were discussing the option internally.

Thanks for all the great ideas and contributions!

Best,

Jen Galaxy team

On 1/6/11 4:28 AM, Peter wrote:

Hi all,

Should the fastx_clipper.xml allow Illumina 1.3+ FASTQ as well as Sanger and Solexa FASTQ (and FASTA)?

i.e. replace this:

<param format="fasta,fastqsolexa,fastqsanger" name="input" type="data" label="Library to clip" />

with this:

<param format="fasta,fastqsolexa,fastqillumina,fastqsanger" name="input" type="data" label="Library to clip" />

Peter _______________________________________________ galaxy-user mailing list galaxy-user@lists.bx.psu.edu http://lists.bx.psu.edu/listinfo/galaxy-user