Hi
I am a registered user of Galaxy. I am trying to load my plant species genome (Cicer arietinum) via FTP using my registered account varsha.pardeshi@rmit.edu.au and password. However, the connection has failed several times.
Kindly help me to solve this problem
I also request you to load Cicer arietinum genome sequence in galaxy dataset
The sequence is available http://www.ncbi.nlm.nih.gov/assembly/525138/
Thank you
Kind regards
Varsha
Hello Varsha,
Are you still having problem with FTP? Is the problem intermittent or persistent?
Are you using a client and the process described in our wiki, at the public main Galaxy site at http://usegalaxy.org? https://wiki.galaxyproject.org/Support#Loading_data https://wiki.galaxyproject.org/FTPUpload
Please note that the server to connect to should be entered as: "usegalaxy.org" (no quotes). Use your email address as the user name and same passwords that you use in the web browser when making the connection. This is functioning from testing on our side.
Best,
Jen Galaxy team
On 1/12/14 4:41 PM, Varsha Pardeshi wrote:
Hi
I am a registered user of Galaxy. I am trying to load my plant species genome (Cicer arietinum) via FTP using my registered account varsha.pardeshi@rmit.edu.au mailto:varsha.pardeshi@rmit.edu.au and password. However, the connection has failed several times.
Kindly help me to solve this problem
I also request you to load Cicer arietinum genome sequence in galaxy dataset
The sequence is available http://www.ncbi.nlm.nih.gov/assembly/525138/
Thank you
Kind regards
Varsha
-- Dr. Varsha Pardeshi Research Fellow Health Innovations Research Institute School of Applied Sciences RMIT University Building 223, Level 1 Plenty Road, Bundoora. Victoria. 3083. Australia. Lab.: +61 3 99257140, Office: +61 3 99257113 Fax.: +61 3 9925 7110 Mobile: +61 3 0416183650
The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists, please use the interface at:
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Hi Varsha,
With regard to the genome addition, I have added this to the genome request ticket in Trello to be reviewed. Currently, a large batch of genomes is undergoing a significant processing cycle for near-term release, and another is already scheduled to start in the beginning of Feb (most are not in this particular ticket, but will be announced when released). This means that the time line is on the order of a few months for those marked as "consider" (e.g. review) in the ticket. https://trello.com/c/kzVklAIE
But, the best news is that you do not have to wait for us. The genome can be used with nearly all tools as a custom genome right away. Instructions for prep and usage are included here in our wiki: https://wiki.galaxyproject.org/Support#Custom_reference_genome
Take care,
Jen Galaxy team
On 1/12/14 4:41 PM, Varsha Pardeshi wrote:
Hi
I am a registered user of Galaxy. I am trying to load my plant species genome (Cicer arietinum) via FTP using my registered account varsha.pardeshi@rmit.edu.au mailto:varsha.pardeshi@rmit.edu.au and password. However, the connection has failed several times.
Kindly help me to solve this problem
I also request you to load Cicer arietinum genome sequence in galaxy dataset
The sequence is available http://www.ncbi.nlm.nih.gov/assembly/525138/
Thank you
Kind regards
Varsha
-- Dr. Varsha Pardeshi Research Fellow Health Innovations Research Institute School of Applied Sciences RMIT University Building 223, Level 1 Plenty Road, Bundoora. Victoria. 3083. Australia. Lab.: +61 3 99257140, Office: +61 3 99257113 Fax.: +61 3 9925 7110 Mobile: +61 3 0416183650
The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists, please use the interface at:
To search Galaxy mailing lists use the unified search at:
galaxy-user@lists.galaxyproject.org
-
Jennifer Jackson -
Varsha Pardeshi