Dear,
Galaxy is installed on our own instance and I would like to administrer Galaxy. I would like to know how could I register myself to access on admin's interface ?
Moreover, I have 2 accounts : 1 - sarah.maman@toulouse.inra.fr 2 - sarah.maman@inra.toulouse.fr The second one (sarah.maman@inra.toulouse.fr) is a mistake. Could you please delete the second one ?
Thank you in advance, Sarah MAMAN
Sarah,
See the universe_wsgi.ini in your galaxy directory for configuration settings. Specifically, the admin_users section:
# Administrative users - set this to a comma-separated list of valid Galaxy # users (email addresses). These users will have access to the Admin section # of the server, and will have access to create users, groups, roles, # libraries, and more. For more information, see: # http://wiki.g2.bx.psu.edu/Admin/Interface #admin_users = None
And change
#admin_users = None
To something like:
admin_users = sarah.maman@toulouse.inra.fr
And then restart your local galaxy.
For a lot more information on running your own galaxy server, see the wiki page at:
http://wiki.g2.bx.psu.edu/Admin/Config/Performance/Production%20Server
Lastly, regarding your accounts-- I don't see either email address registered. Which galaxy server are you referring to here?
Thanks for using Galaxy!
Dannon
On Jan 11, 2012, at 6:19 AM, sarah Maman wrote:
Dear,
Galaxy is installed on our own instance and I would like to administrer Galaxy. I would like to know how could I register myself to access on admin's interface ?
Moreover, I have 2 accounts : 1 - sarah.maman@toulouse.inra.fr 2 - sarah.maman@inra.toulouse.fr The second one (sarah.maman@inra.toulouse.fr) is a mistake. Could you please delete the second one ?
Thank you in advance, Sarah MAMAN
-- Sarah Maman INRA - LGC - SIGENAE Chemin de Borde-Rouge - Auzeville - BP 52627 31326 Castanet-Tolosan cedex - FRANCE Tel: +33(0)5.61.28.57.08 Tax: +33(0)5.61.28.57.53 ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list:
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Dear Galaxy AdministratorI am analysing transcriptome and genome of clinical isolatesStenotrophomonasmaltophilia, would be highly obliged if you could please upload Stenotrophomonas maltophilia K279 and Stenotrophomonas maltophilia R551-3 genome acccesion numbers at NCBI are as following Stenotrophomonas maltophilia K279 (Accession AM743169)
Stenotrophomonas maltophilia R551-3, complete genome Accession: CP001111 Thanking you all in advance Ateequr Rehman
Hello Ateequr,
The quickest way to use new genomes with tools is to use them as a custom reference genome. To do this, load the genome in fasta format into your history and set tool form options to use reference genomes "from the history".
Best practices: 1 - double check that the format is strict fasta (all lines wrapped to same length, no extra lines or hidden characters, sequence entries are unique within file). 2 - use the same genome dataset for all steps within an analysis 3 - load using FTP and make certain load is complete http://galaxyproject.org/wiki/Learn/Upload%20via%20FTP
Hopefully this helps!
Best,
Jen Galaxy team
On 1/13/12 7:00 AM, Ateequr Rehman wrote:
Dear Galaxy Administrator
I am analysing transcriptome and genome of clinical isolatesStenotrophomonasmaltophilia, would be highly obliged if you could please upload Stenotrophomonas maltophilia K279 and Stenotrophomonas maltophilia R551-3 genome acccesion numbers at NCBI are as following
Stenotrophomonas maltophilia K279 (Accession AM743169)
*Stenotrophomonas maltophilia R551-3*, complete genome http://www.ncbi.nlm.nih.gov/nuccore/CP001111.1
Accession: CP001111
Thanking you all in advance Ateequr Rehman
The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists, please use the interface at:
galaxy-user@lists.galaxyproject.org
-
Ateequr Rehman -
Dannon Baker -
Jennifer Jackson -
sarah Maman