On Nov 7, 2011, at 7:11 PM, shamsher jagat wrote:

I uploaded two BAM files and was working with them but when I tried to use them again they are automatically deleted along with all the steps of analysis? Any reason or I am missing something.

Hi Shamsher,

Were you logged in when you performed this analysis?

--nate

Shamsher ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list:

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To manage your subscriptions to this and other Galaxy lists, please use the interface at:

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Hi Shamsher,

Are you by chance working with more than one open Galaxy browser window at a time? Doing this is not recommended as it can cause confusing results between the histories. Instead, move between histories using the "Options -> Saved Histories" form, in a single browser window.

Please let us know if you are still having problems,

Best,

Jen Galaxy team

On 11/7/11 5:53 PM, shamsher jagat wrote:

Yes I was and infect when I logged out and logged in back it was there then I left for lunch and when I come back data is not there? It is weird. Shamsher

On Mon, Nov 7, 2011 at 5:00 PM, Nate Coraor <nate@bx.psu.edu mailto:nate@bx.psu.edu> wrote:

On Nov 7, 2011, at 7:11 PM, shamsher jagat wrote:

 > I uploaded two BAM files and was working with them but when I
tried to use them again they are automatically deleted along with
all the steps of analysis?
 > Any reason or I am missing something.

Hi Shamsher,

Were you logged in when you performed this analysis?

--nate

 >
 > Shamsher
 > ___________________________________________________________
 > The Galaxy User list should be used for the discussion of
 > Galaxy analysis and other features on the public server
 > at usegalaxy.org <http://usegalaxy.org>.  Please keep all replies
on the list by
 > using "reply all" in your mail client.  For discussion of
 > local Galaxy instances and the Galaxy source code, please
 > use the Galaxy Development list:
 >
 > http://lists.bx.psu.edu/listinfo/galaxy-dev
 >
 > To manage your subscriptions to this and other Galaxy lists,
 > please use the interface at:
 >
 > http://lists.bx.psu.edu/

---

The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list:

http://lists.bx.psu.edu/listinfo/galaxy-dev

To manage your subscriptions to this and other Galaxy lists, please use the interface at:

http://lists.bx.psu.edu/

Hello,

Histories are saved automatically and can be renamed from the active history panel or Saved history form. To create a Workflow from a history, use "Options -> Extract Workflow".

Workflows are covered in the Galaxy 101 tutorial: http://main.g2.bx.psu.edu/u/aun1/p/galaxy101

Thank you,

Jen Galaxy team

On 11/8/11 7:48 AM, shamsher jagat wrote:

Could you direct me how I can save history from a series of steps I have performed in Galaxy and can later use the same work flow steps. I think this is what is happening when I logged in back there were two windows open with my log in info

Thanks

Shamsher

On Tue, Nov 8, 2011 at 5:36 AM, Jennifer Jackson <jen@bx.psu.edu mailto:jen@bx.psu.edu> wrote:

Hi Shamsher,

Are you by chance working with more than one open Galaxy browser
window at a time? Doing this is not recommended as it can cause
confusing results between the histories. Instead, move between
histories using the "Options -> Saved Histories" form, in a single
browser window.

Please let us know if you are still having problems,

Best,

Jen
Galaxy team



On 11/7/11 5:53 PM, shamsher jagat wrote:

    Yes I was and infect when I logged out and logged in back it was
    there
    then I left for lunch and when I come back data is not there? It
    is weird.
    Shamsher


    On Mon, Nov 7, 2011 at 5:00 PM, Nate Coraor <nate@bx.psu.edu
    <mailto:nate@bx.psu.edu>
    <mailto:nate@bx.psu.edu <mailto:nate@bx.psu.edu>>> wrote:

        On Nov 7, 2011, at 7:11 PM, shamsher jagat wrote:

     > I uploaded two BAM files and was working with them but when I
        tried to use them again they are automatically deleted along
    with
        all the steps of analysis?
     > Any reason or I am missing something.

        Hi Shamsher,

        Were you logged in when you performed this analysis?

        --nate

     >
     > Shamsher
     > _____________________________________________________________
     > The Galaxy User list should be used for the discussion of
     > Galaxy analysis and other features on the public server
     > at usegalaxy.org <http://usegalaxy.org>
    <http://usegalaxy.org>.  Please keep all replies

        on the list by
     > using "reply all" in your mail client.  For discussion of
     > local Galaxy instances and the Galaxy source code, please
     > use the Galaxy Development list:
     >
     > http://lists.bx.psu.edu/__listinfo/galaxy-dev
    <http://lists.bx.psu.edu/listinfo/galaxy-dev>
     >
     > To manage your subscriptions to this and other Galaxy lists,
     > please use the interface at:
     >
     > http://lists.bx.psu.edu/




    _____________________________________________________________
    The Galaxy User list should be used for the discussion of
    Galaxy analysis and other features on the public server
    at usegalaxy.org <http://usegalaxy.org>.  Please keep all
    replies on the list by
    using "reply all" in your mail client.  For discussion of
    local Galaxy instances and the Galaxy source code, please
    use the Galaxy Development list:

    http://lists.bx.psu.edu/__listinfo/galaxy-dev
    <http://lists.bx.psu.edu/listinfo/galaxy-dev>

    To manage your subscriptions to this and other Galaxy lists,
    please use the interface at:

    http://lists.bx.psu.edu/


--
Jennifer Jackson
http://usegalaxy.org
http://galaxyproject.org/wiki/__Support
<http://galaxyproject.org/wiki/Support>