Hi Kanwar,

I interested in trying Bismark under Galaxy. Could you please point me where I can use it.

please have a look at the pull request ... https://bitbucket.org/galaxy/galaxy-central/pull-request/73/bismark-wrapper-...

Cheers, bjoern

Thanks Kanwar

On Mon, Oct 8, 2012 at 8:08 AM, Björn Grüning bjoern.gruening@pharmazie.uni-freiburg.de wrote: Hi David,

    please do not hijack a different thread :)
    If you are analysing Bisulfite data i would recommend to have
    a look at
    http://www.bioinformatics.babraham.ac.uk/projects/ ...
    especially at
    bismark.

    We have written a wrapper for bismark, its still in testing
    phase but if
    you like to try it out, you are welcome.

    Cheers,
    Bjoern

    > Hi, there,
    >
    > I just got two genome-wide Bisulfite sequences from BGI and
    start to
    > analyze the data.
    >
    > I am trying to use Galaxy; but I find there is no such
    platform
    > available. Does anybody know where I can find this kind
    platform at
    > Galaxy or other places.
    >
    > Thanks
    >
    > David
    >

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