Jen, Thanks for the information. Kathryn

From: Jennifer Jackson [mailto:jen@bx.psu.edu] Sent: Monday, May 13, 2013 6:18 PM To: Sun, Wenping [USA] Cc: galaxy-user@lists.bx.psu.edu Subject: [External] Re: [galaxy-user] Question on galaxy data visualization

Hello Kathryn,

Trackster is the primary data visualization tool and can be accessed by clicking on the mini graph icon within a dataset:

[cid:image001.png@01CE50AA.D31EDA40]

or by going to "Visualization" in the upper menu bar and starting a new track browser. http://wiki.galaxyproject.org/Learn#Visualization

If you are interested, for certain datasets, the icon will also offer other options: Circster and/or Scatterplot. The tool group "Graph/Display Data" has graphing tools and tools that prepare data to be visualized. The tool group "Motif Tools" has a sequence logo generator, and the groups " NGS: QC and manipulation" and " BEDTools" have more graphing tools.

Hopefully this helps,

Jen Galaxy team On 5/13/13 11:08 AM, Sun, Wenping [USA] wrote:

Dear galaxy group,

I have question on the data visualization from output of galaxy pipeline. Is there any ideogram tool inside of galaxy?

Regards,

Kathryn

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