galaxy-user September 2006

galaxy-user@lists.galaxyproject.org

11 participants
13 discussions

Convert Formats
by Liron Levkovitz 06 Sep '06

06 Sep '06

Hello, I'm trying to convert an AXT format file to FASTA . The AXT file include a table with 2,321,097 lines (It's the results of a blastz alignment between hg18 and mm8). Can you give me an estimation of how long it would take? Does it make since that it takes a few days? Thanks in advance, Liron Levkovitz Tel- Aviv University

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Data imports hang
by Ross Hardison 05 Sep '06

05 Sep '06

I encountered a new problem while going through a Galaxy example for my class, using Galaxy2.2. When importing data from the UCSC Main Table Browser, the history column does the usual count-down of "refreshing in 10 sec, 9 sec, 8 sec, ...", but once it stops at "refreshing in 1 sec". Then it just shows the spinning wheel indefinitely. Clicking on "refreshing in 1 sec" completes the import, and now you get the data in the history. - Ross Ross Hardison T. Ming Chu Professor of Biochemistry and Molecular Biology The Pennsylvania State University 304 Wartik Laboratory University Park, PA 16802 e-mail: rch8(a)psu.edu phone: 814-863-0113 FAX: 814-863-7024

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no mm5 sequence data in galaxy 2.2
by Radek Szklarczyk 04 Sep '06

04 Sep '06

when i try to download sequences for mm5 (uploaded bed file) i get an error: 4: Extract genomic DNA on data 2 An error occurred running this job: <font color="yellow">No sequences are available for musMus5</font> For hg17 it works correctly. --- Radek Szklarczyk, radek(a)cs.vu.nl, www.cs.vu.nl/~radek

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galaxy-user September 2006