I was trying to run tophat in a local version of galaxy, but I got the
gzip: stdout: Broken pipe
[Tue Jul 19 14:10:36 2011] Processing bowtie hits
Error: could not open pipe gzip -cd <
It seems that when tophat is calling gzip, the pipe can not be open.
Can anyone suggest a fix to this problem?
Uwe Ohler Laboratory
Institute for Genome Sciences and Policy
101 Science Drive