I am using Galaxy (main) and would like to intersect a bed file I have with the PhastCons scores (primarily placental and primate). After much searching around I can't tell if these files are locally cached and if so how I access them. Alternatively I could get them directly from UCSC, but it seems like these files would be rather large and useful to other users as well. (I apologize if I am missing the obvious, I'm still a novice user.)
I am using hg19, but of course could lift over to convert the coordinates.
Vincent J. Lynch, Ph.D.
Associate Research Scientist
Department of Ecology and Evolutionary Biology (EEB) & Yale Systems Biology Institute (YSBI)
"There is a grandeur in this view of life, with its several powers,
having been originally breathed into a few forms or into one; and that
whilst this planet has gone on cycling according to the fixed laws of
gravity, from so simple a beginning endless forms most beautiful and most
wonderful have been, and are being, evolved." -C. Darwin, 1859